Applications of Foundation Models in Molecular

Program Committee Moderator(s)

• 

  Priya Velu, MD, PhD

  Assistant Professor
  Pathology and Laboratory Medicine
  Weill Cornell Medicine
  New York, New York, United States

Co-Moderator (Early Career)(s)

• 

  Shrey Sukhadia, MS, PhD (he/him/his)

  Assistant Director of Genome Informatics and Clinical Genomics and Advanced Technology, and Instructor at Pathology and Laboratory Medicine
  Dartmouth Health
  Lebanon, New Hampshire, United States

Description: This session will demonstrate two domain applications of foundation models in molecular. The first application uses a foundation model created from massive datasets of anatomic digital whole slide images, corresponding annotations and reports, and multiomics data. The second application leverages large language models to improve annotation of prokaryotic viral proteins.

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Presentations:

• 2:30 PM - 3:15 PM EST

  Foundation Models for Molecular Pathology
  

  Breakout Speaker: Drew Williamson, MD (he/him/his) – Emory University School of Medicine
• 3:15 PM - 4:00 PM EST

  Large Language Models for Annotation of Prokaryotic Viral Proteins
  

  Breakout Speaker: Libusha Kelly, PhD – Albert Einstein College of Medicine